张娟荣 崔泽嘉组 第[1]篇 Kahvejian, A., Quackenbush, J., and Thompson, J.F. (2008). What would you do if you could sequence everything? Nature Biotechnology 26, 1125-1133
张祎焜,李根组选择第七篇文献【7】Langmead, B., Trapnell, C., Pop, M., and Salzberg, S.L. (2009). Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10, R25.
江浩 罗瀚 任烨 Multiplexed tracking of combinatorial genomic mutations in engineered cell populations Ramsey I Zeitoun1, Andrew D Garst1, George D Degen2, Gur Pines1, Thomas J Mansell1, Tirzah Y Glebes1, Nanette R Boyle3 & Ryan T Gill1
朱永为 李恒瑶 第17篇【17]】Trapnell, C., Pachter, L., and Salzberg, S.L. (2009). TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111
张娟荣 崔泽嘉组 第[1]篇 Kahvejian, A., Quackenbush, J., and Thompson, J.F. (2008). What would you do if you could sequence everything? Nature Biotechnology 26, 1125-1133
李晴 袁佳兰 玉冬宝 第6篇*[6] Li, H., and Durbin, R. (2009). Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760.
何京 杨家珺 第13号文献 ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing.
张戈 宓轶群 第14篇[14] Li G, Cai L, Chang H, Hong P, Zhou Q, Kulakova EV, Kolchanov NA, Ruan Y: Chromatin Interaction Analysis with Paired-End Tag (ChIA-PET) sequencing technology and application. BMC Genomics 2014, 15 Suppl 12:S11
这篇已经有人翻译
何京 杨家珺 第[13]篇 Li, G., Fullwood, M.J., Xu, H., Mulawadi, F.H., Velkov, S., Vega, V., Ariyaratne, P.N., Mohamed, Y.B., Ooi, H.S., Tennakoon, C., et al. (2010). ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing. Genome Biol 11, R22
李则尧 王双琦 吕雪莹 侯彩蛟 [10] Feng, J., Liu, T., Qin, B., Zhang, Y., and Liu, X.S. (2012). Identifying ChIP-seq enrichment using MACS.
刘萌、舒明月、王晗、王菁组选第三篇文献:[3] Hawkins, R.D., Hon, G.C., and Ren, B. (2010). Next-generation genomics: an integrative approach. Nature Reviews Genetics 11, 476-486
张祎焜,李根组选择第七篇文献【7】Langmead, B., Trapnell, C., Pop, M., and Salzberg, S.L. (2009). Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10, R25.
曾陈明、张魁元选第二篇文献:【2】Metzker, M.L. (2010). Sequencing technologies – the next generation. Nature Reviews Genetics 11, 31-46
[3] Hawkins, R.D., Hon, G.C., and Ren, B. (2010). Next-generation genomics: an integrative approach. Nature Reviews Genetics 11, 476-486
已经有人选过了
曾陈明、张魁元选择第二篇文献:【2】Metzker, M.L. (2010). Sequencing technologies – the next generation. Nature Reviews Genetics 11, 31-46
人类RNA-seq最后一条。ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR365/ERR365983/ERR365983_2.fastq.gz各位不要选这个啦~
http://www.nature.com/nbt/journal/v30/n7/full/nbt.2280.html
不知道我找的这篇文章可不可以?
可以
李晴 人类RNA—Seq倒数第四条和倒数第三条cell_culture_Scramble_siRNA_control_rep1
李晴 数据ERR365991_1.fastq和ERR365991_2.fastq
王瑾 汪瑞敏 吕晨恺 *[8] Liu, E.T., Pott, S., and Huss, M. (2010). Q&A: ChIP-seq technologies and the study of gene regulation. BMC Biol 8, 56.
已经有人翻译了
程晞,崔志远,孙瑞麒,汤佳杰。 第11篇文献。[11] Bardet, A.F., He, Q., Zeitlinger, J., and Stark, A. (2012). A computational pipeline for comparative ChIP-seq analyses. Nature Protocols 7, 45-61.
江浩 罗瀚 任烨 [9] Zhang, Y., Liu, T., Meyer, C.A., Eeckhoute, J., Johnson, D.S., Bernstein, B.E., Nusbaum, C., Myers, R.M., Brown, M., Li, W., et al. (2008). Model-based analysis of ChIP-Seq (MACS). Genome Biol 9, R137.
已经有人翻译了
江浩 罗瀚 任烨 Multiplexed tracking of combinatorial genomic mutations in engineered cell populations Ramsey I Zeitoun1, Andrew D Garst1, George D Degen2, Gur Pines1, Thomas J Mansell1, Tirzah Y Glebes1, Nanette R Boyle3 & Ryan T Gill1
第20篇 HTSeq: Analysing high-throughput sequencing data with Python
http://bioinformatics.oxfordjournals.org/content/31/2/166